13 Sep 2022

waterquality for ArcGIS Pro Toolbox: User’s Guide

Abstract: Monitoring water quality of small inland lakes and reservoirs is a critical component of the US Army Corps of Engineers (USACE) water quality management plans. However, limited resources for traditional field-based monitoring of numerous lakes and reservoirs covering vast geographic areas often leads to reactional responses to harmful algal bloom (HAB) outbreaks. Satellite remote sensing methodologies using HAB indicators is a good low-cost option to traditional methods and has been proven to maximize and complement current field-based approaches while providing a synoptic view of water quality (Beck et al. 2016; Beck et al. 2017; Beck et al. 2019; Johansen et al. 2019; Mishra et al. 2019; Stumpf and Tomlinson 2007; Wang et al. 2020; Xu et al. 2019; Reif 2011). To assist USACE water quality management, we developed an Environmental Systems Research Institute (ESRI) ArcGIS Pro desktop software toolbox (waterquality for ArcGIS Pro) founded on the design and research established in the waterquality R software package (Johansen et al. 2019; Johansen 2020). The toolbox enables the detection, monitoring, and quantification of HAB indicators (chlorophyll-a, phycocyanin, and turbidity) using Sentinel-2 satellite imagery. Four tools are available: (1) automating the download of Sentinel-2 Level-2A imagery, (2) creating stacked image with options for cloud and non-water features masks, (3) applying water quality algorithms to generate relative estimations of one to three water quality parameters (chlorophyll-a, phycocyanin, and turbidity), and (4) creating linear regression graphs and statistics comparing in situ data (from field-based water sampling) to relative estimation data. This document serves as a user’s guide for the waterquality for ArcGIS Pro toolbox and includes instructions on toolbox installation and descriptions of each tool’s inputs, outputs, and troubleshooting guidance.

13 Jun 2022

A Review of Empirical Algorithms for the Detection and Quantification of Harmful Algal Blooms Using Satellite-Borne Remote Sensing

Abstract: Harmful Algal Blooms (HABs) continue to be a global concern, especially since predicting bloom events including the intensity, extent, and geographic location, remain difficult. However, remote sensing platforms are useful tools for monitoring HABs across space and time. The main objective of this review was to explore the scientific literature to develop a near-comprehensive list of spectrally derived empirical algorithms for satellite imagers commonly utilized for the detection and quantification HABs and water quality indicators. This review identified the 29 WorldView-2 MSI algorithms, 25 Sentinel-2 MSI algorithms, 32 Landsat-8 OLI algorithms, 9 MODIS algorithms, and 64 MERIS/Sentinel-3 OLCI algorithms. This review also revealed most empirical-based algorithms fell into one of the following general formulas: two-band difference algorithm (2BDA), three-band difference algorithm (3BDA), normalized-difference chlorophyll index (NDCI), or the cyanobacterial index (CI). New empirical algorithm development appears to be constrained, at least in part, due to the limited number of HAB-associated spectral features detectable in currently operational imagers. However, these algorithms provide a foundation for future algorithm development as new sensors, technologies, and platforms emerge.